{"id":23,"date":"2019-02-27T14:44:48","date_gmt":"2019-02-27T14:44:48","guid":{"rendered":"https:\/\/blogs.ncl.ac.uk\/rebeccapayne2\/?page_id=23"},"modified":"2019-03-14T16:08:03","modified_gmt":"2019-03-14T16:08:03","slug":"publications","status":"publish","type":"page","link":"https:\/\/blogs.ncl.ac.uk\/rebeccapayne2\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"<table style=\"height: 2259px\" width=\"487\">\n<tbody>\n<tr>\n<td width=\"429\"><strong>2018<\/strong><\/p>\n<div class=\"altmetric-embed altmetric-doi-10.1038\/s41586-018-0698-6 altmetric-badge-type-donut altmetric-badge-popover-right\"><\/div>\n<ul>\n<li class=\"tighten-line-height small-space-below\"><a href=\"https:\/\/www.nature.com\/articles\/s41586-018-0698-6?WT.feed_name=subjects_biological-sciences\"><strong>Single-cell reconstruction of the early maternal\u2013fetal interface in humans<\/strong><\/a>.\u00a0<span style=\"font-family: inherit;font-size: inherit\">Vento-Tormo R, Efremova M, Turco M, Botting R, Meyer K, Park J, Stephenson E, <\/span><strong style=\"font-family: inherit;font-size: inherit\">Payne RP,<\/strong><span style=\"font-family: inherit;font-size: inherit\"> Goncalves A, Zou A, Henriksson J, Wood L, Lisgo S, Filby A, Wright G, Stubbington M, Haniffa M, Moffett A, Teichmann SA. <\/span><strong style=\"font-family: inherit;font-size: inherit\">Nature<\/strong><span style=\"font-family: inherit;font-size: inherit\">. 2018 Nov;563(7731):347-353<\/span><\/li>\n<\/ul>\n<p><strong>2015<\/strong><\/p>\n<ul>\n<li><a href=\"https:\/\/www.pnas.org\/content\/112\/17\/E2119\"><strong>Reply to Jefferys: Declining HIV Virulence<\/strong><\/a><strong>. <\/strong><strong>Payne RP<\/strong>, Muenchhoff M, Goulder PJR. <strong>PNAS <\/strong><em>2015 Mar Letter (online only)<\/em><\/li>\n<\/ul>\n<p><strong>2014<\/strong><\/p>\n<div class=\"altmetric-embed altmetric-doi-10.1073\/pnas.1413339111 altmetric-badge-type-donut altmetric-badge-popover-right\"><\/div>\n<ul>\n<li><strong><a href=\"https:\/\/www.pnas.org\/content\/111\/50\/E5393\">Impact of HLA-driven HIV adaptation and of anti-retroviral therapy on\u00a0<\/a><\/strong><strong><a href=\"https:\/\/www.pnas.org\/content\/111\/50\/E5393\">HIV\u00a0virulence.\u00a0<\/a><span class=\"truncated-visible\">Payne RP, <\/span><\/strong><span class=\"truncated-visible\">Muenchhoff M, Mann J, Roberts HE, Matthews P, <\/span><span class=\"truncated-hidden\">Adland E,\u00a0<\/span><span class=\"truncated-hidden\">Hempenstall A, Huang KH, Brockman M, Brumme Z, Sinclair M, Miura T, Frater J, Esse<\/span><span class=\"truncated-hidden\">x M, Shapiro R, Walker BD, Ndung\u2019u T, McLean AR, Carlson JM, Goulder PJR.<\/span>\u00a0<strong>PNAS<\/strong> <em>2014 Dec 16;111(50):E5393-400<\/em><br \/>\n<span style=\"font-family: inherit;font-size: inherit\">\u00a0\u00a0 \u00a0 \u00a0<\/span><a href=\"https:\/\/www.scopus.com\/record\/display.uri?eid=2-s2.0-84918592939&amp;origin=resultslist&amp;sort=plf-f&amp;src=s&amp;sid=ef43fb20e70d7872c5726355454eeee6&amp;sot=autdocs&amp;sdt=autdocs&amp;sl=18&amp;s=AU-ID%2815760722000%29&amp;relpos=2&amp;citeCnt=43&amp;searchTerm=\"><img loading=\"lazy\" decoding=\"async\" class=\"alignright wp-image-149\" style=\"color: #444444;font-size: 14px\" src=\"https:\/\/blogs.ncl.ac.uk\/rebeccapayne2\/files\/2019\/03\/citation-image.jpg\" alt=\"\" width=\"57\" height=\"60\" \/><\/a><\/li>\n<\/ul>\n<p><span style=\"font-family: inherit;font-size: inherit\">\u00a0 \u00a0 \u00a0 This<\/span><em style=\"font-family: inherit;font-size: inherit\"> paper showed that HIV is weakening over time.<\/em><\/p>\n<p><script src='https:\/\/d1bxh8uas1mnw7.cloudfront.net\/assets\/embed.js'><\/script><\/p>\n<hr \/>\n<ul>\n<li><strong><a href=\"https:\/\/jvi.asm.org\/content\/88\/18\/10392\">Impact of HLA Selection Pressure on HIV Fitness at a\u00a0<\/a><\/strong><strong><a href=\"https:\/\/jvi.asm.org\/content\/88\/18\/10392\">Population Level in Mexico and Barbados<\/a>. <\/strong>Juarez-Molina CI,<strong> Payne R, <\/strong>Soto-Nava M, et al. <strong>Journal of Virology <\/strong><em><em>2014 Sep 15;88(18):10392-8<\/em><\/em><br \/>\n<hr \/>\n<\/li>\n<li><strong><a href=\"https:\/\/jvi.asm.org\/content\/88\/9\/4668\">Differential escape patterns within the dominant HLA-B*57:03-restricted HIV Gag epitope reflect distinct clade-specific functional constraints.<\/a>\u00a0Payne RP, <\/strong>Branch S, Kl\u00f8verpris H, Matthews PC et al. <strong>Journal of Virology <\/strong><em><em>2014 May;88(9):4668-78<\/em><\/em><br \/>\n<hr \/>\n<\/li>\n<\/ul>\n<p><strong>2013<\/strong><\/p>\n<ul>\n<li><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC3807415\/\"><strong>HLA-specific intracellular epitope processing shapes an immunodominance pattern for HLA-B*57 that is distinct from HLA-B*58:01. <\/strong><\/a>Kl\u00f8verpris HN, Stryhn A, Harndahl M,<strong> Payne R,\u00a0<\/strong>et al.\u00a0<strong>Journal of Virology <\/strong><em><em>2013 Oct;87(19):10889-94<\/em><\/em><br \/>\n<hr \/>\n<\/li>\n<li><a href=\"https:\/\/jvi.asm.org\/content\/87\/5\/2628\"><strong>Early antigen presentation of protective HIV-1 KF11<sub>Gag<\/sub> and KK10<sub>Gag<\/sub> epitopes from incoming viral particles facilitates rapid recognition of infected cells by specific CD8+ T cells. <\/strong><\/a>Kl\u00f8verpris H, <strong>Payne RP<\/strong>, Sacha JB, Rasaiyaah JT, et al. <strong>Journal of Virology. <\/strong><em><em>2013 Mar;87(5):2628-38<\/em><\/em><br \/>\n<hr \/>\n<\/li>\n<\/ul>\n<p><strong>\u00a02012<\/strong><\/p>\n<ul>\n<li><a href=\"https:\/\/journals.plos.org\/plosone\/article?id=10.1371\/journal.pone.0047799\"><strong>Co-operative additive effect between HLA alleles in control of HIV-1 viraemia is linked to breadth of CD8+ T cell responses. <\/strong><\/a>Matthews P, Listgarten J, Carlson J, <strong>Payne RP<\/strong>, Huang KH, et al. <strong>PLoS One<\/strong>. <em><em>2012;7(10)<\/em><\/em><br \/>\n<hr \/>\n<\/li>\n<li><a href=\"https:\/\/jvi.asm.org\/content\/86\/23\/12643.long\"><strong>Differential clade-specific HLA-B*3501 association with HIV-1 disease outcome is linked to immunogenicity of a single Gag epitope<\/strong><strong>. <\/strong><\/a>Matthews PC*, Koyanagi M*,<span style=\"font-family: inherit;font-size: inherit\">Kloverpris HN *, Harndahl M, Stryhn A, Gatanaga H, Oka S, Molina CJ, Ponce HV, Rios SA, Cole D, Carlson J, <\/span><strong style=\"font-family: inherit;font-size: inherit\">Payne RP<\/strong><span style=\"font-family: inherit;font-size: inherit\">, et al. <\/span><strong style=\"font-family: inherit;font-size: inherit\">\u00a0Journal of Virology<\/strong><em style=\"font-family: inherit;font-size: inherit\">: 2012 <\/em><em style=\"font-family: inherit;font-size: inherit\"><em style=\"font-family: inherit;font-size: inherit\">Dec;86(23):12643-54<\/em><\/em><br \/>\n<hr \/>\n<\/li>\n<li><a href=\"https:\/\/jvi.asm.org\/content\/86\/2\/919.long\"><strong>\u00a0<\/strong><strong>HLA-B*57 Micropolymorphism shapes HLA allele-specific epitope immunongenicity, selection pressure , and HIV immune control. <\/strong><\/a>Kloverpris HN, Stryhn A, Harndahl M, van der Stok M, <strong>Payne RP<\/strong>, et al.<strong> J Virol<\/strong>. <em>2012 Jan;86(2):919-29<\/em>.<br \/>\n<hr \/>\n<\/li>\n<\/ul>\n<p><strong>Pre-2012<\/strong><\/p>\n<ul>\n<li><strong><a href=\"http:\/\/www.jimmunol.org\/content\/186\/10\/5675.long\">HLA-A*7401-mediated control of HIV viraemia is independent of its linkage disequilibrium with HLA-B*5703<\/a>. <\/strong>Matthews PC, Adland E, Listgarten J, Leslie A, Mkhwanazi N, Harndahl M, <strong>Payne RP<\/strong>, et al. <strong>J Immunol<\/strong>. <em><em>2011 May 15;186(10):5675-86<\/em><\/em><br \/>\n<hr \/>\n<\/li>\n<li><strong><a href=\"https:\/\/jvi.asm.org\/content\/84\/20\/10543\">Efficacious early antiviral activity of HIV Gag- and Pol-specific HLA-B*2705-restricted CD8<sup>+<\/sup> T-cells.<\/a> Payne RP<\/strong>, Kl\u00f8verpris H, Sacha JB, et al. <strong>Journal of <\/strong><strong>Virolog<\/strong><strong style=\"font-family: inherit;font-size: inherit\">y<\/strong><em style=\"font-family: inherit;font-size: inherit\">:<\/em><em style=\"font-family: inherit;font-size: inherit\">2<\/em><em style=\"font-family: inherit;font-size: inherit\">0<\/em><em style=\"font-family: inherit;font-size: inherit\">1<\/em><a href=\"https:\/\/www.scopus.com\/record\/display.uri?eid=2-s2.0-77957195721&amp;origin=resultslist&amp;sort=plf-f&amp;src=s&amp;sid=ef43fb20e70d7872c5726355454eeee6&amp;sot=autdocs&amp;sdt=autdocs&amp;sl=18&amp;s=AU-ID%2815760722000%29&amp;relpos=12&amp;citeCnt=62&amp;searchTerm=\"><img loading=\"lazy\" decoding=\"async\" class=\"alignright wp-image-172\" style=\"color: #444444;font-size: 14px\" src=\"https:\/\/blogs.ncl.ac.uk\/rebeccapayne2\/files\/2019\/03\/citation-image62.png\" alt=\"\" width=\"59\" height=\"62\" \/><\/a><em style=\"font-family: inherit;font-size: inherit\">0; 84(20)-10543-57<\/em><strong style=\"font-family: inherit;font-size: inherit\">\u00a0<\/strong><\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<hr \/>\n<ul>\n<li><strong><a href=\"https:\/\/www.sciencedirect.com\/science\/article\/abs\/pii\/S0065308X08006015?via%3Dihub\">HLA-mediated control of HIV and HIV adaptation to HLA.<\/a> Payne RP*<\/strong>, Matthews PC, Prado JG, Goulder PJ<strong>. Advances in Parasitology<\/strong><em>, 2009; 58:1-20 <\/em>(Review)<br \/>\n<hr \/>\n<\/li>\n<li><a href=\"https:\/\/jvi.asm.org\/content\/83\/9\/4605\"><strong>HLA footprints on human immunodeficiency virus type 1 are associated <\/strong><\/a>with Interclade Polymorphisms and Intraclade Phylogenetic Clustering<\/li>\n<\/ul>\n<hr \/>\n<ul>\n<li><strong>\u00a0<\/strong><strong><a href=\"https:\/\/www.nature.com\/articles\/nature07746\">Adaptation of HIV-1 to human leukocyte antigen class I<\/a>.\u00a0<\/strong>Kawashima Y, Pfaf<a href=\"https:\/\/www.scopus.com\/record\/display.uri?eid=2-s2.0-63949087100&amp;origin=resultslist&amp;sort=plf-f&amp;src=s&amp;sid=ef43fb20e70d7872c5726355454eeee6&amp;sot=autdocs&amp;sdt=autdocs&amp;sl=18&amp;s=AU-ID%2815760722000%29&amp;relpos=15&amp;citeCnt=312&amp;searchTerm=\"><img loading=\"lazy\" decoding=\"async\" class=\"alignright wp-image-190\" src=\"https:\/\/blogs.ncl.ac.uk\/rebeccapayne2\/files\/2019\/03\/citation-image312.png\" alt=\"\" width=\"71\" height=\"60\" \/><\/a>ferott K, Frater J, Matthews P, <strong>Payne R*<\/strong>, et al. <strong>Nature<\/strong><em>, 2009 Apr 2;458(7238):641-5<\/em><\/li>\n<\/ul>\n<hr \/>\n<ul>\n<li><strong><a href=\"https:\/\/jvi.asm.org\/content\/82\/17\/8548\">Central role of reverting mutations in HLA associations with human\u00a0immunodeficiency virus set point. <\/a><\/strong>Matthews PC, Prendergast A, Leslie A, Crawford H, <strong>Payne R<\/strong>, et al. <strong>Journal of Virology<\/strong><em><em>, 2008 Sep;82(17):8548-59.<\/em><\/em><br \/>\n<hr \/>\n<\/li>\n<li><strong><a href=\"https:\/\/jvi.asm.org\/content\/82\/13\/6434\">HLA class I-driven evolution of human immunodeficiency virus type I subtype c proteome: immune escape and viral load<\/a>. <\/strong>Rousseau CM, Daniels MG, Carlson JM, Kadie C, Crawford H, Prendergast A, Matthews P, <strong>Payne R<\/strong>, et al. <strong>Journal of Virology.<\/strong> <em><em>2008 Jul;82(13):6434-46<\/em><\/em><br \/>\n<hr \/>\n<\/li>\n<li><a href=\"https:\/\/jvi.asm.org\/content\/81\/12\/6742\"><strong>Effective T-cell responses select human immunodeficiency virus mutants and slow disease progression<\/strong><\/a>. Frater AJ, Brown H, Oxenius A, G\u00fcnthard HF, Hirschel B, Robinson N, Leslie AJ, <strong>Payne R<\/strong> et al. <strong>Journal of Virology<\/strong>, <em><em>2007 Jun;81(12):6742-51<\/em><\/em><br \/>\n<hr \/>\n<\/li>\n<li><a href=\"https:\/\/jvi.asm.org\/content\/81\/7\/3667\"><strong>Control of human immunodeficiency virus type 1 is associated with HLA-B*13 and targeting of multiple gag-specific CD8+ T-cell epitopes. <\/strong><\/a>Honeyborne I, Prendergast A, Pereyra F, Leslie A, Crawford H, <strong>Payne R<\/strong> et al. <strong>Journal of Virology<\/strong>. <em><em>2007 Apr;81(7):3667-72.<\/em><\/em><br \/>\n<hr \/>\n<\/li>\n<\/ul>\n<div class=\"altmetric-embed altmetric-doi-10.1038\/nm1520 altmetric-badge-type-donut altmetric-badge-popover-right\"><\/div>\n<ul>\n<li><strong><a href=\"https:\/\/www.nature.com\/articles\/nm1520\">CD8+ T-cell responses to different HIV proteins have discordant associations with viral load<\/a>. <\/strong>Kiepiela P, Ngumbela K, Thobakgale C, Ramduth D, Honeyborne I, Moodley E, Reddy S, de Pierres C, Mncube Z, Mkhwanazi N, Bishop K, van der Stok M, Nair K, Khan N, Crawford H, <strong>Payne R,<\/strong> et al. <strong>Nature Medicine<\/strong><em>. 2007 Jan;13(1):46-53<\/em><\/li>\n<\/ul>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"<p>2018 Single-cell reconstruction of the early maternal\u2013fetal interface in humans.\u00a0Vento-Tormo R, Efremova M, Turco M, Botting R, Meyer K, Park J, Stephenson E, Payne RP, Goncalves A, Zou A, Henriksson J, Wood L, Lisgo S, Filby A, Wright G, Stubbington M, Haniffa M, Moffett A, Teichmann SA. Nature. 2018 Nov;563(7731):347-353 2015 Reply to Jefferys: Declining &hellip; <\/p>\n<p class=\"link-more\"><a href=\"https:\/\/blogs.ncl.ac.uk\/rebeccapayne2\/publications\/\" class=\"more-link\">Continue reading<span class=\"screen-reader-text\"> &#8220;Publications&#8221;<\/span><\/a><\/p>\n","protected":false},"author":6274,"featured_media":0,"parent":0,"menu_order":2,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-23","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/blogs.ncl.ac.uk\/rebeccapayne2\/wp-json\/wp\/v2\/pages\/23","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/blogs.ncl.ac.uk\/rebeccapayne2\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/blogs.ncl.ac.uk\/rebeccapayne2\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/blogs.ncl.ac.uk\/rebeccapayne2\/wp-json\/wp\/v2\/users\/6274"}],"replies":[{"embeddable":true,"href":"https:\/\/blogs.ncl.ac.uk\/rebeccapayne2\/wp-json\/wp\/v2\/comments?post=23"}],"version-history":[{"count":95,"href":"https:\/\/blogs.ncl.ac.uk\/rebeccapayne2\/wp-json\/wp\/v2\/pages\/23\/revisions"}],"predecessor-version":[{"id":196,"href":"https:\/\/blogs.ncl.ac.uk\/rebeccapayne2\/wp-json\/wp\/v2\/pages\/23\/revisions\/196"}],"wp:attachment":[{"href":"https:\/\/blogs.ncl.ac.uk\/rebeccapayne2\/wp-json\/wp\/v2\/media?parent=23"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}