$ module load apps/breakpointer/1.0/bin apps/breakpointer/1.0/bin | -- apps/bwa/0.6.2/gcc-4.4.6 | | -- libs/gcc/system | | * --> OK | * --> OK | -- apps/samtools/0.1.8/gcc-4.4.6 | | -- libs/gcc/system ... SKIPPED (already loaded) | * --> OK | OK
$ ls $BREAKPOINTERBIN BreakPointer BreakPointer.sh fh_BreakPointerScatter
$ ls $BREAKPOINTERDIR bin doc lib share
$ module whatis apps/breakpointer
apps/breakpointer :
Title: BreakPointer
Summary: Pinpoint rearrangement breakpoints using paired end reads
License: NONFREE - For academic non-commercial research purposes only
Group: Bioinformatics
URL: http://www.broadinstitute.org/cancer/cga/breakpointer
Name: breakpointer
Version: 1.0
Module: apps/breakpointer/1.0/bin
Module path: /opt/gridware/etc/modules/apps/breakpointer/1.0/bin
Package path: /opt/gridware/pkg/apps/breakpointer/1.0/bin
Repository: git+http://download.alces-software.com/git/packager-base@cdc9148
Package: ext/breakpointer/1.0@9068e192
Last update: 2014-05-02
Builder: root@headnode1.lampredi.cluster.local
Build date: 2014-05-02T15:29:09
Build parameters: tarball=/opt/gridware/ext/BreakPointer_1.0.tar
Compiler: N/A
Dependencies: apps/bwa/0.6.2/gcc-4.4.6 (using: apps/bwa/0.6.2/gcc-4.4.6)
apps/samtools/0.1.8/gcc-4.4.6 (using: apps/samtools/0.1.8/gcc-4.4.6)
For further information, execute:
module help apps/breakpointer/1.0/bin
>> GET STARTED <<
Please refer to the website for further details on usage of this
package.
$ module show apps/breakpointer/1.0/bin
/opt/gridware/etc/modules/apps/breakpointer/1.0/bin:
module-whatis
Title: BreakPointer
Summary: Pinpoint rearrangement breakpoints using paired end reads
License: NONFREE - For academic non-commercial research purposes only
Group: Bioinformatics
URL: http://www.broadinstitute.org/cancer/cga/breakpointer
Name: breakpointer
Version: 1.0
Module: apps/breakpointer/1.0/bin
Module path: /opt/gridware/etc/modules/apps/breakpointer/1.0/bin
Package path: /opt/gridware/pkg/apps/breakpointer/1.0/bin
Repository: git+http://download.alces-software.com/git/packager-base@cdc9148
Package: ext/breakpointer/1.0@9068e192
Last update: 2014-05-02
Builder: root@headnode1.lampredi.cluster.local
Build date: 2014-05-02T15:29:09
Build parameters: tarball=/opt/gridware/ext/BreakPointer_1.0.tar
Compiler: N/A
Dependencies: apps/bwa/0.6.2/gcc-4.4.6 (using: apps/bwa/0.6.2/gcc-4.4.6)
apps/samtools/0.1.8/gcc-4.4.6 (using: apps/samtools/0.1.8/gcc-4.4.6)
For further information, execute:
module help apps/breakpointer/1.0/bin
module-prereq apps/bwa/0.6.2/gcc-4.4.6
module-prereq apps/samtools/0.1.8/gcc-4.4.6
module-conflict apps/breakpointer
setenv BREAKPOINTERDIR /opt/gridware/pkg/apps/breakpointer/1.0/bin
setenv BREAKPOINTERBIN /opt/gridware/pkg/apps/breakpointer/1.0/bin/bin
prepend-path LD_LIBRARY_PATH /opt/gridware/pkg/apps/breakpointer/1.0/bin/lib/mcr/v710/sys/java/jre/glnxa64/jre/lib/amd64
prepend-path LD_LIBRARY_PATH /opt/gridware/pkg/apps/breakpointer/1.0/bin/lib/mcr/v710/sys/java/jre/glnxa64/jre/lib/amd64/client
prepend-path LD_LIBRARY_PATH /opt/gridware/pkg/apps/breakpointer/1.0/bin/lib/mcr/v710/sys/java/jre/glnxa64/jre/lib/amd64/server
prepend-path LD_LIBRARY_PATH /opt/gridware/pkg/apps/breakpointer/1.0/bin/lib/mcr/v710/sys/java/jre/glnxa64/jre/lib/amd64/native_threads
prepend-path LD_LIBRARY_PATH /opt/gridware/pkg/apps/breakpointer/1.0/bin/lib/mcr/v710/sys/os/glnxa64
prepend-path LD_LIBRARY_PATH /opt/gridware/pkg/apps/breakpointer/1.0/bin/lib/mcr/v710/bin/glnxa64
prepend-path LD_LIBRARY_PATH /opt/gridware/pkg/apps/breakpointer/1.0/bin/lib/mcr/v710/runtime/glnxa64
setenv XAPPLRESDIR /opt/gridware/pkg/apps/breakpointer/1.0/bin/lib/mcr/v710/X11/app-defaults
prepend-path PATH /opt/gridware/pkg/apps/breakpointer/1.0/bin/bin
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