HPC – Lampredi – software update – Trinity 20130814

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$ ls $TRINITYDIR
Analysis docs install_tests.sh notes PerlLibAdaptors sample_data util
Butterfly galaxy-plugin LICENSE.txt perl README Trinity.pl
Chrysalis Inchworm Makefile PerlLib Release.Notes trinity-plugins

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$ module whatis apps/trinity/20130814
apps/trinity/20130814:

Title: trinity
Summary: A novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data
License: BSD
Group: Bioinformatics
URL: http://trinityrnaseq.sourceforge.net/

Name: trinity
Version: 20130814
Module: apps/trinity/20130814/gcc-4.4.6
Module path: /opt/gridware/etc/modules/apps/trinity/20130814/gcc-4.4.6
Package path: /opt/gridware/pkg/apps/trinity/20130814/gcc-4.4.6

Repository: git+http://download.alces-software.com/git/packager-base@0fda8da
Package: apps/trinity/20130814@8c2c4fe7
Last update: 2013-10-01

Builder: root@headnode1.lampredi.cluster.local
Build date: 2013-10-01T12:04:20
Build modules: apps/cpanminus/1.5017/noarch
Compiler: compilers/gcc/system
System: Linux 2.6.32-279.2.1.el6_lustre.gc46c389.x86_64 x86_64
Arch: Intel(R) Xeon(R) CPU E5620 @ 2.40GHz, 2x4 (b6b89932)
Dependencies: libs/gcc/system (using: libs/gcc/system)

For further information, execute:

module help apps/trinity/20130814/gcc-4.4.6

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$ module help apps/trinity/20130814/gcc-4.4.6

----------- Module Specific Help for 'apps/trinity/20130814/gcc-4.4.6' -----------

======== trinity ========
A novel method for the efficient and robust de novo
reconstruction of transcriptomes from RNA-seq data
========================

This module sets up your environment for the use of the 'trinity'
application. This module sets up version '20130814' of the
application.

>> SYNOPSIS <> LICENSING <> FURTHER INFORMATION <> GET STARTED <<

Please refer to the website for further details on usage of this
package.

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$ module show apps/trinity/20130814/gcc-4.4.6
-------------------------------------------------------------------
/opt/gridware/etc/modules/apps/trinity/20130814/gcc-4.4.6:

module-whatis

Title: trinity
Summary: A novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data
License: BSD
Group: Bioinformatics
URL: http://trinityrnaseq.sourceforge.net/

Name: trinity
Version: 20130814
Module: apps/trinity/20130814/gcc-4.4.6
Module path: /opt/gridware/etc/modules/apps/trinity/20130814/gcc-4.4.6
Package path: /opt/gridware/pkg/apps/trinity/20130814/gcc-4.4.6

Repository: git+http://download.alces-software.com/git/packager-base@0fda8da
Package: apps/trinity/20130814@8c2c4fe7
Last update: 2013-10-01

Builder: root@headnode1.lampredi.cluster.local
Build date: 2013-10-01T12:04:20
Build modules: apps/cpanminus/1.5017/noarch
Compiler: compilers/gcc/system
System: Linux 2.6.32-279.2.1.el6_lustre.gc46c389.x86_64 x86_64
Arch: Intel(R) Xeon(R) CPU E5620 @ 2.40GHz, 2x4 (b6b89932)
Dependencies: libs/gcc/system (using: libs/gcc/system)

For further information, execute:

module help apps/trinity/20130814/gcc-4.4.6