HPC – Lampredi – software update – FASTQC 0.10.1

$ module whatis apps/fastqc

apps/fastqc          :

 

Title: FastQC

Summary: A quality control tool for high throughput sequence data

License: GPLv3+

Group: Bioinformatics

URL: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/

 

Name: fastqc

Version: 0.10.1

Module: apps/fastqc/0.10.1/noarch

Module path: /opt/gridware/etc/modules/apps/fastqc/0.10.1/noarch

Package path: /opt/gridware/pkg/apps/fastqc/0.10.1/noarch

 

Repository: git+http://download.alces-software.com/git/packager-base@0d67d87

Package: apps/fastqc/0.10.1@0380e731

Last update: 2012-10-31

 

Builder: root@headnode1.lampredi.cluster.local

Build date: 2014-02-24T10:41:03

Compiler: N/A

 

For further information, execute:

module help apps/fastqc/0.10.1/noarch

$ module help apps/fastqc/0.10.1/noarch

 

———– Module Specific Help for ‘apps/fastqc/0.10.1/noarch’ —————————

 

 

======== FastQC ========

A quality control tool for high throughput sequence data

=======================

 

This module sets up your environment for the use of the ‘fastqc’

application. This module sets up version ‘0.10.1’ of the

application.

 

 

>> SYNOPSIS <<

 

FastQC aims to provide a simple way to do some quality control

checks on raw sequence data coming from high throughput sequencing

pipelines. It provides a modular set of analyses which you can use

to give a quick impression of whether your data has any problems of

which you should be aware before doing any further analysis.

 

The main functions of FastQC are:

 

* Import of data from BAM, SAM or FastQ files (any variant)

* Providing a quick overview to tell you in which areas there may

be problems

* Summary graphs and tables to quickly assess your data

* Export of results to an HTML based permanent report

* Offline operation to allow automated generation of reports

without running the interactive application

 

 

>> LICENSING <<

 

This package is made available subject to the following license(s):

 

GPLv3+

 

Please refer to the website for further details regarding licensing.

 

 

>> FURTHER INFORMATION <<

 

More information about this software can be found at the website:

 

http://www.bioinformatics.babraham.ac.uk/projects/fastqc/

 

For further details regarding this module, including the environment

modifications it will apply, execute:

 

module show apps/fastqc/0.10.1/noarch

 

 

>> GET STARTED <<

 

Please refer to the website for further details on usage of this

package.

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