JAGS 3.4.0, Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation not wholly unlike BUGS.
http://mcmc-jags.sourceforge.net/
---------------------------------------------------------------------------------
$ module load apps/jags
apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0
| — libs/gcc/system
| * –> OK
|
OK
$ ls $JAGSDIR
bin include lib libexec share
$ ls $JAGSBIN
jags
$ jags
Welcome to JAGS 3.4.0 on Fri Feb 28 13:13:48 2014
JAGS is free software and comes with ABSOLUTELY NO WARRANTY
Loading module: basemod: ok
Loading module: bugs: ok
---------------------------------------------------------------------------------
$ module whatis apps/jags
apps/jags :
Title: JAGS
Summary: Analysis of Bayesian hierarchical models using Markov Chain Monte Carlo simulation
License: GPLv2
Group: Bioinformatics
URL: http://mcmc-jags.sourceforge.net/
Name: jags
Version: 3.4.0
Module: apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0
Module path: /opt/gridware/etc/modules/apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0
Package path: /opt/gridware/pkg/apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0
Repository: file:/opt/gridware/etc/repos/local
Package: apps/jags/3.4.0@08f607cc
Last update: 2014-02-28
Builder: root@headnode1.lampredi.cluster.local
Build date: 2014-02-28T11:48:10
Build modules: libs/atlas/3.10.0/gcc-4.4.6
Compiler: compilers/gcc/system
System: Linux 2.6.32-279.2.1.el6_lustre.gc46c389.x86_64 x86_64
Arch: Intel(R) Xeon(R) CPU E5620 @ 2.40GHz, 2×4 (b6b89932)
Dependencies: libs/gcc/system (using: libs/gcc/system)
For further information, execute:
module help apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0
---------------------------------------------------------------------------------
$ module help apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0
———– Module Specific Help for ‘apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0’ —————————
======== JAGS ========
Analysis of Bayesian hierarchical models using Markov Chain
Monte Carlo simulation
=====================
This module sets up your environment for the use of the ‘jags’
application. This module sets up version ‘3.4.0’ of the
application.
>> SYNOPSIS <<
JAGS is Just Another Gibbs Sampler. It is a program for analysis of
Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC)
simulation not wholly unlike BUGS. JAGS was written with three aims
in mind:
* To have a cross-platform engine for the BUGS language.
* To be extensible, allowing users to write their own functions,
distributions and samplers.
* To be a plaftorm for experimentation with ideas in Bayesian
modelling.
>> LICENSING <<
This package is made available subject to the following license(s):
GPLv2
Please refer to the website for further details regarding licensing.
>> FURTHER INFORMATION <<
More information about this software can be found at the website:
http://mcmc-jags.sourceforge.net/
For further details regarding this module, including the environment
modifications it will apply, execute:
module show apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0
>> GET STARTED <<
Please refer to the website for further details on usage of this
package.
---------------------------------------------------------------------------------
$ module show apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0
——————————————————————-
/opt/gridware/etc/modules/apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0:
module-whatis
Title: JAGS
Summary: Analysis of Bayesian hierarchical models using Markov Chain Monte Carlo simulation
License: GPLv2
Group: Bioinformatics
URL: http://mcmc-jags.sourceforge.net/
Name: jags
Version: 3.4.0
Module: apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0
Module path: /opt/gridware/etc/modules/apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0
Package path: /opt/gridware/pkg/apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0
Repository: file:/opt/gridware/etc/repos/local
Package: apps/jags/3.4.0@08f607cc
Last update: 2014-02-28
Builder: root@headnode1.lampredi.cluster.local
Build date: 2014-02-28T11:48:10
Build modules: libs/atlas/3.10.0/gcc-4.4.6
Compiler: compilers/gcc/system
System: Linux 2.6.32-279.2.1.el6_lustre.gc46c389.x86_64 x86_64
Arch: Intel(R) Xeon(R) CPU E5620 @ 2.40GHz, 2×4 (b6b89932)
Dependencies: libs/gcc/system (using: libs/gcc/system)
For further information, execute:
module help apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0
module-prereq libs/gcc/system
module-conflict apps/jags
setenv JAGSDIR /opt/gridware/pkg/apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0
setenv JAGSBIN /opt/gridware/pkg/apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0/bin
setenv JAGSLIB /opt/gridware/pkg/apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0/lib
setenv JAGSINCLUDE /opt/gridware/pkg/apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0/include
prepend-path LD_LIBRARY_PATH /opt/gridware/pkg/apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0/lib
prepend-path MANPATH /opt/gridware/pkg/apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0/share/man
prepend-path PKG_CONFIG_PATH /opt/gridware/pkg/apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0/lib/pkgconfig
prepend-path PATH /opt/gridware/pkg/apps/jags/3.4.0/gcc-4.4.6+atlas-3.10.0/bin
———————————————————————————
Lampredi HPC
igm-lampredi-users@ncl.ac.uk
IGM IT
igmithelp@ncl.ac.uk
x8625