The wonderful world of Microbiology

Ever wondered what goes on in the Newcastle University Biomedical Sciences labs behind the scenes? On Wednesday 28th February, researchers from the school of Biosciences, Nutritional and Sports Sciences organised a Microbiology research fair to give students a sneak peak into the fascinating world of microbiology research, PhDs, careers, summer placements and final year projects. There were also amazing opportunities to go and see the research laboratories and facilities on the lab tours. So I couldn’t resist tagging along to see what was going on – and let me tell you, it didn’t disappoint! From chatting with researchers deep in ground-breaking projects to getting a first hand look at cutting-edge equipment, there was so much to discover.

Students were talked through different research at each station

There were many areas of research, but one big topic that caught my attention was the gut microbiome. Even though this research fair was mainly aimed at Biosciences students, it was interesting as a student dietitian myself to see the vast amount of research that the University is conducting on this area, as it is a really new and exciting area in the advancing field of nutrition. Some PhD students were researching into how fibre is broken down in the gut by different strains of gut bacteria and how the body uses these chemicals that are produced. One student was focussing particularly on how caramelised sugars are digested by the gut microbiome, and even though excess sugars are seen to have harmful effects on health, some gut bacteria can break these down to useful chemicals!

One of the most interesting stations for me was the station that was showing a machine taking species from the sea to make antibiotics. A remote machine goes down 4000m deep in the South Pacific and takes samples from the bottom of the ocean. It was fascinating how intricate the collection process was, yet how simply the machine could extract the sediment. These samples are then transported back to the labs and the microbes are cultured. The microbes of particular interest to them are Actinomycetes, and these produce 70% of all antibiotics. These actinomycetes have the ability to kill MRSA and other large strains of microbes. These researchers really had a passion for the undiscovered potential of the sea, and it seems like this is a really up and coming area of research.

Here you can see the machine arm working at the bottom of the sea floor to extract the sediment

The most exciting part of the afternoon was the tours of the research labs! From state-of-the-art equipment to cutting-edge facilities, the students got a first hand look at what goes on in the world of research. Our tour leader’s research was focussing on Staphylococcus Aureus. Yes, we are talking about the superbug MRSA – a bacteria that is very complicated as it has the potential to cause lots of different diseases.

Gel electrophoresis equipment in the laboratory
Our fab laboratory tour guide showing us her MRSA superbug cultures

The labs had loads of cool equipment – the second one we were showed around was a biochemistry lab with research focussing on proteins. Their mission is to purify tiny proteins to find the protein of interest, and then grow crystals of it. The coolest machine in the lab by far was the X ray generator, which focuses on the protein crystal. The x ray signal is then amplified and detracts using electron density, which will rotate and shoot as many x rays as possible to collect the data. This helps them to calculate the structure of the molecule with the help of computer software, therefore figuring out what the protein looks like and its function. Ever heard of the lock and key interaction? Well, imagine the protein as the lock and the target molecule as the key. With 3D printing technology, these researchers can create super cool models of the protein structure. And here’s a fun fact to wrap things up – this model below was created of a tyrosine residue. Turns out, it’s not just some fancy scientific term – it’s actually a super important ingredient that can be used in toothpaste to break down plaque in your mouth, showing how important this science research is in everyday life!

The 3D model of tyrosine residues generated by the 3D printer


Biomedical scientists are also actively involved at the Freeman Hospital in researching urinary tract infections (UTIs) through a patient-centred approach, involving collaboration with clinicians ant their patients. This approach emphasizes the importance of understanding the individual needs and experiences of patients in managing and treating UTIs. By working closely with clinicians and patients, these biomedical scientists are contributing to the development of personalized treatment strategies and interventions to improve patients outcomes. They also are conducting laboratory based research to better understand the underlying causes of UTIs, including identification of pathogens, antibiotic resistance patterns and host immune responses to help advance our understanding of them and develop more effective treatment options. This work shows the diverse scope of the Biomedical science profession, which extends beyond traditional lab-based research to the hospitals to use more patient-centred approaches to better improve quality of care.

Judith and Phillip are both active researchers within the Freeman Hospital and with Newcastle University

The research showcased at the fair provided a glimpse into the groundbreaking research happenign at the university in various fields. From the gut microbiome to exploring the potential of the sea for antibiotic discovery, students had so much opportunity to ask questions. The future of science is definitely looking bright!

My placement year at Reckitt

By Joel Tyler

Reckitt is a Fast Moving Consumer Goods (FMCG) company with offices and employees spread out across the world. Founded in 1870, Reckitt started off by selling laundry starch in Hull, now, Reckitt operates in a range of markets and is the owner of various health and medicinal brands such as; Nurofen, Strepsils, Dettol, Vanish and Durex to name a few. 

Some examples of Reckitt products sold around the world. Via Google Images

My placement year was a lab-based role involved in working for the brand Veet, this included both formulation manufacturing and analytical testing for the depilatory cream products currently available to buy in shops as well as a new product being developed and to be released in the near future. 

A day in the life

Due to the fast paced environment (as an FMCG company), I found that there was always something to do all the time and the days/weeks were fairly similar. This is because of the constant manufacturing of different formulations of new products to be tested under different stability conditions, and then followed by analytical testing of the formulations to identify which was the best product.  

Using a light microscope to examine the structure of a hair sample

Therefore, my normal day would start with a team meeting to discuss where everyone was at with formulation/testing work and to discuss steps/processes going forward or if anything had failed/gone wrong with the batch. After, I would go to the lab to complete any formulation/analytical testing which needed to be done.  

I enjoyed this working routine as it meant I gained far more lab experienced than I initially thought I would, it was always very clear what work I needed to be doing and I was always given lots of support if things ever went wrong. I would say I definitely wasn’t treated as a ‘student’ but a very integral part of the team which also surprised me! 

Student Project

In the second half of my placement, I organised and created a project alongside my line manager which involved testing the tensile strength of hair using a texture analyser and a brand new test method. I also presented my results to the rest of the Veet brand to explain my findings. 

During my project I had to test thousands of individual hair samples and as a result became the most experienced within the lab at using the texture analyser, this meant that I had the opportunity to present and perform samples to higher up executives within the company (and even the Global Head of R&D) which was an amazing experience. 

Hair sample being tested in the Texture analyser to investigate the tensile
A Becomix machine used to formulate and manufacture different depilatory creams. Via Google Images

Why I chose to do a placement

I decided during first year of my degree that I wanted to do a placement, specifically a lab based placement, because I was enjoying being in the lab at university but I was curious if I would enjoy working in a lab as a full time job to give myself an idea for post graduate jobs.  

Having completed my full year, I now know I could happily work in a lab after university, so applying for lab based roles isn’t a big risk but also that I know I can work efficiently and thrive under the environment. My placement gave me many challenges along the way (which is natural when learning new things in a short space of time) but I gained valuable and employable experience in overcoming these obstacles and realised that I feel confident within a lab setting.

I would highly recommend doing a placement!

Completing my placement year was definitely one of the most important things I have done within my life. The obvious reasons being all the different skills and attributes which I learnt/developed along the way, but also, the experiences which are available in just one year really surprised me, with the huge amounts of social networking needed to be done for my day to day job, I found myself naturally speaking to and shadowing other departments, creating professional relationships which will last for life. So I would say even if you are even considering to apply for placements, just go for it because you won’t regret it! 

Would your blood glow?

By Sarah Holder

The Beginning 

All the way back at the start of my second year at Newcastle University, the thought of a placement year was a nice one, but I never thought I’d be one of the lucky few to be offered one! When I came across the advert for the job at Labcorp Huntingdon, I knew it would be the only intern position I wanted to apply for. The role sounded perfect and it was located only half an hour from my home village. I sent off my initial application and then received an invite for an interview! And then another! And another! I couldn’t believe it when I received a phone call in January to say I had been offered the intern position for Immunology and Immunotoxicology 2022-2023. Brilliant! 

Background to my Project 

Human blood is made up of several major components including plasma, platelets, red blood cells and white blood cells. White blood cells are involved in the body’s response to infection and need to be tested separately to the rest of the blood components to see the best results.  

Via Giphy.

Infections can come in the form of viruses or bacteria. Viruses present markers called epitopes on their surface which the white blood cells use to identify what they are. Bacteria don’t directly present these epitopes but via white blood cells they infect which present their epitopes for them. When these epitopes are come across in the bloodstream, specific white blood cells release chemicals called cytokines to activate the immune response and fight the infection. We were adding epitopes artificially in the form of our stimulants to elicit a response from six different human donors and judge the stimulant that gives the clearest response across the six blood samples.   

My Project 

My project during my time on placement at Labcorp had two parts. Improving the white blood cell isolation method and investigating white blood cell responses to positive controls we added to them and attaching fluorescent green and red markers to the different cytokines produced. We had longer to plan my project than expected so it didn’t get into the lab until May, creating more pressure for everything to go smoothly once it was underway. If anything had gone drastically wrong, we wouldn’t have had enough time to order the reagents required for another attempt. The images taken at the end were full of fluorescent spots so the project worked! 

Via Giphy

My project has provided a future method for FluoroSpot assays to be carried out at Labcorp on our Huntingdon site which will hopefully be able to bring more revenue into I&I. Future research into the method we developed for my project could be done to optimise it further and make it a more streamlined process. 

Life on Placement 

I was lucky enough to not only secure a placement but secure a placement I could commute to from my home. Thankfully, my parents were happy to have me back for another year! While the 6:45am wakeup call wasn’t my favourite, I could spend my evenings visiting my friends from home, which was lovely. I worked a mixture of 8am-4pm and 8:30am-4:30pm throughout the week and it was nice actually being able to catch a glimpse of daylight in the winter when leaving at 4pm instead of both arriving and leaving in what feels like the dead of night every day. 

Every month a department social was held by the I&I Social Committee. My favourites were the Halloween bar crawl, Christmas party and lab getaway weekend to a lakeside cabin with the team.  These really helped me to feel part of the team during my time working at Labcorp. 

Via Giphy

Summary 

I would really recommend a placement year to anyone considering one, the lab experience gained is a perfect CV addition for life after university and the additional skills of working in a team and independently while in an industry setting are invaluable. I was very fortunate and had the best line manager in terms of supporting my transition into a working environment, this was aided massively by the chocolate that magically appeared on my desk every Friday. I’m not sure what my future after university is going to be yet, but thanks to my placement year I know I can join a workplace and adapt to fit in very quickly, and training can be provided if I feel I have any gaps in my knowledge for my future role. No question is a stupid question! 

A Placement Year at GSK – Sequencing Genomes

By: Natalie Taylor – BSc Biomedical Sciences

Edited by: Laila Hussain

Second year of uni rolled around, and I realised I hardly had any lab experience (thanks COVID). This was a dilemma I attempted to remedy by applying for a placement year. I never considered I’d be accepted by such a prestigious company as GSK. Even less did I consider I would be working in a field as interesting as genetics. The application stress paid off! I was placed in the Discovery Genomics department working on single cell RNA sequencing. This basically means reading genes that are currently ‘switched on’ (expressed). Knowing this information is crucial for understanding disease, as we can quantify which genes were switched on/off in disease states compared to healthy states. With this information we can then get an idea of the genes function and thus, what therapeutic action to take. 

My Application Journey – It’s ok not to know everything!

When I say I was almost 100% sure I failed my interview I was not joking. GSK’s interview stage was split into two sections. One half was situational questions such as “tell us a time you faced a challenge” etc. The other was technical questions. This was where I flopped. I didn’t know the answer to any of the questions! However, I discovered the point of these questions was not only to test your scientific knowledge, this can be taught, but to also see how you manage uncertainty and to test your resilience. It was a daunting experience, but thanks to the kind interviewers and some persistence I managed to give all the answers a go. This was what the interviewers were looking for!

Two days later I received a call from one of the interviewers offering me the placement!

My-day-to-day 

As I mentioned above, I’m working on sequencing (or reading) the genes of individual cells. This means I’m in the lab a lot! I get to work on many different diseases and cell types, which all involve working with very small volumes. Attention to detail is paramount – something I’ve had to learn the hard way! 

A visual example of the types of tubes and volumes we typically work with in RNA sequencing- sometimes even smaller! Image from: unsplash

I also get to use lots of very cool – and very expensive – machines. The machine pictured below on the left is what sequences RNA and the one to the right is a robot that can do a big portion of the lab work involved with preparing the RNA for sequencing for you. It has some limitations though, so I mostly performed my experiments manually by hand. 

Illumina Sequencer (Left) & Chromium Connect (Right): Photos from 10x Genomics and Illumina

After about three months of training, I started planning and carrying out my own experiments independently. I got the chance to sequence many different immune cells, including T cells and macrophages as part of active experiments in the search for potential cancer therapeutics. Apart from single cell RNA sequencing, I’ve also been fortunate to perform a CRISPR knock out experiment on B cells whilst using cutting-edge automation platforms such as the Dragonfly and Bravo.  

On a typical day, my experiments take around 6 hours to reach a safe stopping point. Luckily, I’m able to get a few breaks in when my samples are incubating. During these breaks, I take full advantage of all of the green space at GSK Stevenage. It’s quite normal for employees to go on regular walks around the site – breaks are very encouraged which is nice!

GSK Campus and Labs in Stevenage: Photos from GSK’s Website

Outside of lab work, I’ve also gotten involved with the wider community at GSK by being a part of a committee for students called IP Unite and an employee resource group called Women’s Leadership Initiative (WLI). My role in these groups varies, typically I will plan and host events aimed to foster new relationships and grow networks. One of the scariest events I held was a PhD information event with IP Unite that involved me speaking in front of 100 people in a lecture theatre – luckily I was only introducing speakers and closing the event – still, it was very outside of my comfort zone! In general, I find that the placement pushes me outside of my comfort zone, but that’s what yields the most growth so I know it’s super beneficial. 

Overall, the placement has been the best experience, better than I expected! I have grown so much as a scientist and a person. I feel much more prepared for life after uni. For now though, I’m just ready to tackle final year!

My Experience as a Year In Industry Student

By Joel Tyler, BSc Physiological Sciences

Edited by Maddie Wildridge

Reckitt is a Fast Moving Consumer Goods (FMCG) company with offices and employees spread out across the world. Founded in 1870, Reckitt started off by selling laundry starch in Hull, now, Reckitt operates in a range of markets and is the owner of various health and medicinal brands such as; Neurofen, Strepsils, Dettol, Vanish and Durex to name a few.

Examples of some Reckitt products sold around the world

My placement year was a lab-based role involved in working for the brand Veet, this included both formulation manufacturing and analytical testing for the depilatory cream products currently available to buy in shops as well as a new product being developed and to be released in the near future.

A Day in the Life

Using a Light Microscope to examine the structure of a hair sample

Due to the fast paced environment (as an FMCG company), I found that there was always something to do all the time and the days/weeks were fairly similar. This is because of the constant manufacturing of different formulations of new products to be tested under different stability conditions, and then followed by analytical testing of the formulations to identify which was the best product.

Therefore, my normal day would start with a team meeting to discuss where everyone was at with formulation/testing work and to discuss steps/processes going forward or if anything had failed/gone wrong with the batch. After, I would go to the lab to complete any formulation/analytical testing which needed to be done.

I enjoyed this working routine as it meant I gained far more lab experienced than I initially thought I would, it was always very clear what work I needed to be doing and I was always given lots of support if things ever went wrong. I would say I definitely wasn’t treated as a ‘student’ but a very integral part of the team which also surprised me!

Student Project
In the second half of my placement, I organised and created a project alongside my line manager which involved testing the tensile strength of hair using a texture analyser and a brand new test method. I also presented my results to the rest of the Veet brand to explain my findings.

Hair sample being tested in the Texture Analyser to investigate the tensile strength

During my project I had to test thousands of individual hair samples and as a result became the most experienced within the lab at using the texture analyser, this meant that I had the opportunity to present and perform samples to higher up executives within the company (and even the Global Head of R&D) which was an amazing experience.

A Becomix machine used to formulate and manufacture different depilatory creams during my placement year

Why I Chose To Do a Placement
I decided during first year of my degree that I wanted to do a placement, specifically a lab based placement, because I was enjoying being in the lab at university but I was curious if I would enjoy working in a lab as a full time job to give myself an idea for post graduate jobs.

Having completed my full year, I now know I could happily work in a lab after university, so applying for lab based roles isn’t a big risk but also that I know I can work efficiently and thrive under the environment. My placement gave me many challenges along the way (which is natural when learning new things in a short space of time) but I gained valuable and employable experience in overcoming these obstacles and realised that I feel confident within a lab setting.

I Would Highly Recommend a Placement!
Completing my placement year was definitely one of the most important things I have done within my life. The obvious reasons being all the different skills and attributes which I learnt/developed along the way, but also, the experiences which are available in just one year really surprised me, with the huge amounts of social networking needed to be done for my day to day job, I found myself naturally speaking to and shadowing other departments, creating professional relationships which will last for life. So I would say even if you are even considering to apply for placements, just go for it because you won’t regret it!

A big pharma placement? There’s more to do than just science.

By Kate Jervis

When I first found out I had a placement at AstraZeneca (AZ), I thought I had a pretty good idea of what my days would be – hours and hours working in the lab, writing up experiments and poring over graphs. Maybe, I thought, I can improve my communication skills by presenting data to my team. But even with the unexpected shakeup of lockdown and coronavirus, I didn’t realise just how oversimplified my idea of a lab-based placement was.

Zoom call with coffee. Photo by Chris Montgomery on Unsplash.

I am a fan of lab work, but anyone who knows me well can tell you that one of my favourite pastimes is admin. I have no shame in admitting that I’m the person who finds joy in organising an inbox, or drawing up spreadsheets to track a team’s progress through a big task. It’s a strange hobby, but it’s satisfying, and so when I saw adverts to recruit a new AZ early talent committee, I could hardly not apply for the role of secretary. I had no professional secretarial experience, but it sounded so me!

Continue reading “A big pharma placement? There’s more to do than just science.”

My Summer Travels with Cryptosporidium

Rosie, our Biomed undergrad tells you of her experience working in Wales and Liverpool on a summer research placement

By Rosie Gathercole

Working with poo turned out to be exactly the summer experience I wanted!

I worked at the national Cryptosporidium Reference Unit (CRU) at Public Health Wales in Swansea with Professor Rachel Chalmers and her team. I received a Scholarship from the Society for Applied Microbiology (SfAM) for this placement, writing the application together with Rachel.

Rosie with a computer screen behind her showing the live spectra produced by the mass spec machine
Me working on my summer placement

Cryptosporidium is a parasite that causes diarrhoea, is found globally and is typically passed from animals, other people, food and fresh water sources. It is currently a human health issue due to the significant effect it has in developing countries and the lack of specific treatments to fight the parasite. Quite often how well you recover from the illness depends on how healthy you were to begin with!

Continue reading “My Summer Travels with Cryptosporidium”

The day I was asked to poison someone

By Dr Sarah Judge

When I got a phone call out of the blue from a screenwriter for Hollyoaks, the popular Channel 4 TV programme, asking for help with one of their upcoming stories, I was intrigued.

Why ask me, a scientist at Newcastle University, for help?

Top secret

I wasn’t allowed to know who, but the screenwriter wanted me to poison and kill off one of the soap characters.

Continue reading “The day I was asked to poison someone”